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I was testing a Zend Studio beta(php), and I see a good system, if in your script you have a function like:

function foo($arg1,$arg2){
...
}

then when you type foo a box appears showing

function foo($arg1,$arg2)
Add description

like a pre-compiled function. But if you clic Add Description it takes you to the code section where the funcion is and append this code:

function foo($arg1,$arg2){

//@ID1->foo Add description here
//@ID2->arg1 Add description here
//@ID3->arg2 Add description here

...
}

And when you change the values and type foo again, the box appears showing

function foo($arg1 This arg is an integer,$arg2 And this is text)
Edit description

And other thing, no matter if the function is in the document or in a include....

Can Helios implement it ?