Removing gi# from a bunch of sequences?
Posted: Fri Oct 29, 2010 5:24 pm
Hi,
I would like to remove all but the accession #(ie:NP_721220.1), species (ie:[Strept mut]), and the sequence of course.
starting with this
>gi|24379265|ref|NP_721220.1| excinuclease ABC subunit B [Strept mut]
MIDRKDNNQFHLVSKYEPSGDQPEAIEALVDNIEGGEKAQILKGATGTGKTYTMSQVIQKVNKPTLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
ending up with this
>NP_721220.1 [Strept mut]
MIDRKDNNQFHLVSKYEPSGDQPEAIEALVDNIEGGEKAQILKGATGTGKTYTMSQVIQKVNKPTLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
Ideally I would like to keep the accession # and replace .1 [Genus species] with the 1st letter of the genus and the first three of the species.
Like this:
ending up with this
>NP_721220.Smu
MIDRKDNNQFHLVSKYEPSGDQPEAIEALVDNIEGGEKAQILKGATGTGKTYTMSQVIQKVNKPTLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
Is this possible to do in one step of replacing?
Thank you so much,
Joseph Boggs
example data below
>gi|24379265|ref|NP_721220.1| excinuclease ABC subunit B [Streptococcus mutans UA159]
MIDRKDNNQFHLVSKYEPSGDQPEAIEALVDNIEGGEKAQILKGATGTGKTYTMSQVIQKVNKPTLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|290580728|ref|YP_003485120.1| excinuclease ABC subunit B [Streptococcus mutans NN2025]
MIDRKDNNQFHLVSKYEPSGDQPEAIEALVDNIEGGEKAQILKGATGTGKTYTMSQVIQKVNKPTLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|306831686|ref|ZP_07464843.1| excision endonuclease subunit UvrB [Streptococcus gallolyticus subsp. gallolyticus TX20
MIDRVENNQFKLVSKYQPSGDQPEAIEALVDNIEGGEKAQILLGATGTGKTYTMSQVIAKVNKPTLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|288905600|ref|YP_003430822.1| excinuclease ABC (subunit B) [Streptococcus gallolyticus UCN34]
MIDRIENNQFKLVSKYQPSGDQPEAIEALVDNIEGGEKAQILLGATGTGKTYTMSQVIAKVNKPTLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|306833826|ref|ZP_07466951.1| excision endonuclease subunit UvrB [Streptococcus bovis ATCC 700338]
MIDRVENNQFKLVSKYQPSGDQPEAIEALVDNIEGGEKAQILLGATGTGKTYTMSQVIAKVNKPTLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|228477022|ref|ZP_04061660.1| excinuclease ABC subunit B [Streptococcus salivarius SK126]
MIDRKEDNQFHLVSKYEPSGDQPQAIEALVDNIEGGEKAQILKGATGTGKTYTMSQVIQRVNKPTLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDFYQPEAYVPSSDTYIEKDSSV
>gi|22537607|ref|NP_688458.1| excinuclease ABC subunit B [Streptococcus agalactiae 2603V/R]
MIDRKDTNRFKLVSKYSPSGDQPQAIETLVDNIEGGEKAQILKGATGTGKTYTMSQVIAQVNKPTLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|77409684|ref|ZP_00786351.1| excinuclease ABC, B subunit [Streptococcus agalactiae COH1]
MIDRKDTNRFKLVSKYSPSGDQPQAIETLVDNIEGGEKAQILKGATGTGKTYTMSQVIAQVNKPTLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|76787746|ref|YP_330102.1| excinuclease ABC subunit B [Streptococcus agalactiae A909]
MIDRKDTNRFKLVSKYSPSGDQPQAIETLVDNIEGGEKAQILKGATGTGKTYTMSQVIAQVNKPTLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|171779931|ref|ZP_02920835.1| hypothetical protein STRINF_01718 [Streptococcus infantarius subsp. infantarius ATCC BA
MIDRIENNHFKLVSKYEPSGDQPQAIETLVNNIEGGEKAQILLGATGTGKTYTMSQVIAKVNKPTLVIAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|116628195|ref|YP_820814.1| excinuclease ABC subunit B [Streptococcus thermophilus LMD-9]
MKGKTMIDRKEDNQFHLVSKYEPSGDQPQAIETLVDNIKGGEKAQILKGATGTGKTYTMSQVIQRVNKPTLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIE
>gi|251782717|ref|YP_002997020.1| excinuclease ABC subunit B [Streptococcus dysgalactiae subsp. equisimilis GGS_124]
MIDKRDDKPFHLVSKYEPSGDQPQAIETLVDNIEGGEKAQILLGATGTGKTYTMSQVINKVNKPTLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|55821473|ref|YP_139915.1| excinuclease ABC subunit B [Streptococcus thermophilus LMG 18311]
MKGKTMIDRKEDNQFHLVSKYEPSGDQPQAIETLVDNIKGGEKAQILKGATGTGKTYTMSQVIQRVNKPTLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIE
>gi|222153289|ref|YP_002562466.1| excinuclease ABC subunit B [Streptococcus uberis 0140J]
MIDRRDENTFKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILLGATGTGKTYTMSQVISKVNKPTLVIAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|223932268|ref|ZP_03624271.1| excinuclease ABC, B subunit [Streptococcus suis 89/1591]
MINRNTENQFKLVSKYSPSGDQPQAIETLVDNIEGGEKAQILMGATGTGKTYTMSQVIARVNKPTLVIAHNKTLAGQLYSEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|146320885|ref|YP_001200596.1| excinuclease ABC subunit B [Streptococcus suis 98HAH33]
MINRNTENQFKLVSKYAPSGDQPQAIETLVDNIEGGEKAQILMGATGTGKTYTMSQVIARVNKPTLVIAHNKTLAGQLYSEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|289168043|ref|YP_003446312.1| excinuclease ABC-subunit B [Streptococcus mitis B6]
MINRITDNQFKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|225860928|ref|YP_002742437.1| excinuclease ABC subunit B [Streptococcus pneumoniae Taiwan19F-14]
MINRITDNKFKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|225868289|ref|YP_002744237.1| UvrABC system protein B (UvrB protein) [Streptococcus equi subsp. zooepidemicus]
MIDKRDFKAFKLVSKYDPSGDQPQAIEALVDNIEGGEKAQILLGATGTGKTYTMSQVISKVNKPTLVIAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|15903161|ref|NP_358711.1| excinuclease ABC subunit B [Streptococcus pneumoniae R6]
MINHITDNQFKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|307704944|ref|ZP_07641835.1| excinuclease ABC, B subunit [Streptococcus mitis SK597]
MINRITDNQFKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|149012289|ref|ZP_01833358.1| excinuclease ABC, B subunit [Streptococcus pneumoniae SP19-BS75]
MINHITDNQFKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|307708786|ref|ZP_07645248.1| excinuclease ABC, B subunit [Streptococcus mitis NCTC 12261]
MITRITDNQFKLVSKYEPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|270292807|ref|ZP_06199018.1| excinuclease ABC, B subunit [Streptococcus sp. M143]
MINRITDNQFKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|15901100|ref|NP_345704.1| excinuclease ABC subunit B [Streptococcus pneumoniae TIGR4]
MINHITDNQFKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|307709471|ref|ZP_07645928.1| excinuclease ABC, B subunit [Streptococcus mitis SK564]
MINRITDNQFKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|306829598|ref|ZP_07462788.1| excision endonuclease subunit UvrB [Streptococcus mitis ATCC 6249]
MINRITDNKFKLVSKYEPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|225856905|ref|YP_002738416.1| excinuclease ABC subunit B [Streptococcus pneumoniae P1031]
MINHITDNQFKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|195978380|ref|YP_002123624.1| excinuclease ABC subunit B [Streptococcus equi subsp. zooepidemicus MGCS10565]
MIDKRDFKAFKLVSKYAPSGDQPQAIEALVDNIESGEKAQILLGATGTGKTYTMSQVISKVNKPTLVIAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|153854|gb|AAA27020.1| uvs402 protein [Streptococcus pneumoniae]
MERGILMINHITDNQFKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYI
>gi|293365540|ref|ZP_06612249.1| excision endonuclease subunit UvrB [Streptococcus oralis ATCC 35037]
MINRITDNKFKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|306825137|ref|ZP_07458479.1| excision endonuclease subunit UvrB [Streptococcus sp. oral taxon 071 str. 73H25AP]
MINRITDNKFKLVSKYEPSGDQPQAIERLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|225870778|ref|YP_002746725.1| UvrABC system protein B (UvrB protein) [Streptococcus equi subsp. equi 4047]
MIDKRDFKAFKLVSKYAPSGDQPQAIETLVDNIEGGEKAQILLGATGTGKTYTMSQVISKVNKPTLVVAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|302023818|ref|ZP_07249029.1| excinuclease ABC subunit B [Streptococcus suis 05HAS68]
MINRNTENQFKLVSKYSPSGDQPQAIETLVDNIEGGEKAQILMGATGTGKTYTMSQVIARVNKPTLVIAHNKTLAGQLYSEFNALFPQNAVEYFVSYSDYYQPEAYVPSSDTYIEKDSSS
>gi|169833714|ref|YP_001694670.1| excinuclease ABC subunit B [Streptococcus pneumoniae Hungary19A-6]
MINHITDNQFKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|149019230|ref|ZP_01834592.1| excinuclease ABC subunit B [Streptococcus pneumoniae SP23-BS72]
MINHITDNQFKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|296876387|ref|ZP_06900439.1| excision endonuclease subunit UvrB [Streptococcus parasanguinis ATCC 15912]
MINRVTDNKFKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVIAQVNKPTLVIAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|148993848|ref|ZP_01823250.1| excinuclease ABC, B subunit [Streptococcus pneumoniae SP9-BS68]
MINHITDNQFKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|307706695|ref|ZP_07643501.1| excinuclease ABC, B subunit [Streptococcus mitis SK321]
MINRITDNQFKLVSKYQPSGDQPQAIKQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|301794321|emb|CBW36746.1| UvrABC system protein B (UvrB protein) [Streptococcus pneumoniae INV104]
MINHITDNQFKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|303254266|ref|ZP_07340375.1| excinuclease ABC subunit B [Streptococcus pneumoniae BS455]
MINHITDNQFKLVSKYQPSGDQLQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|262282394|ref|ZP_06060162.1| excinuclease ABC subunit B [Streptococcus sp. 2_1_36FAA]
MINRITDNKFELISKYEPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVIAQVNKPTLVIAHNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|125718171|ref|YP_001035304.1| excinuclease ABC subunit B [Streptococcus sanguinis SK36]
MINRITDNKFELVSKYKPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVIAQVNKPTLVIAHNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|157149718|ref|YP_001450327.1| excinuclease ABC subunit B [Streptococcus gordonii str. Challis substr. CH1]
MINRITDNKFELISKYEPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVIAQVNKPTLVIAHNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|21910532|ref|NP_664800.1| excinuclease ABC subunit B [Streptococcus pyogenes MGAS315]
MIDKRDDKPFKLKSKYKPSGDQPQAIESLVDNIEGGEKAQILLGATGTGKTYTMSQVISKVNKPTLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|71903721|ref|YP_280524.1| excinuclease ABC subunit B [Streptococcus pyogenes MGAS6180]
MIDKRDDKPFKLKSKYKPSGDQPQAIESLVDNIEGGEKAQILLGATGTGKTYTMSQVISKVNKPTLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|94990640|ref|YP_598740.1| excinuclease ABC subunit B [Streptococcus pyogenes MGAS10270]
MIDKRDDKPFKLKSKYKPSGDQPQAIESLVDNIEGGEKAQILLGATGTGKTYTMSQVISKVNKPTLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|139473634|ref|YP_001128350.1| excinuclease ABC subunit B [Streptococcus pyogenes str. Manfredo]
MIDKRDDKPFKLKSKYKPSGDQPQAIESLVDNIEGGEKAQILLGATGTGKTYTMSQVISKVNKPTLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|50914390|ref|YP_060362.1| excinuclease ABC subunit B [Streptococcus pyogenes MGAS10394]
MIDKRDDKPFKLKSKYKPSGDQPQAIESLVDNIEGGEKAQILLGATGTGKTYTMSQVISKVNKPTLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|19746295|ref|NP_607431.1| excinuclease ABC subunit B [Streptococcus pyogenes MGAS8232]
MIDKRDDKPFKLKSKYKPSGDQPQAIESLVDNIEGGEKAQILLGATGTGKTYTMSQVISKVNKPTLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|15675262|ref|NP_269436.1| excinuclease ABC subunit B [Streptococcus pyogenes M1 GAS]
MIDKRDDKPFKLKSKYKPSGDQPQAIESLVDNIEGGEKAQILLGATGTGKTYTMSQVISKVNKPTLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|94994564|ref|YP_602662.1| excinuclease ABC subunit B [Streptococcus pyogenes MGAS10750]
MIDKRDDKPFKLKSKYKPSGDQPQAIESLVDNIEGGEKAQILLGATGTGKTYTMSQVISKVNKPTLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|15672544|ref|NP_266718.1| excinuclease ABC subunit B [Lactococcus lactis subsp. lactis Il1403]
MAIERITDNKFELVSKYEPAGDQGEAIAELVDNIENGEKAQILRGATGTGKTYTMSQVIARTGKPTLVMAHNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSS
>gi|281491028|ref|YP_003353008.1| excinuclease ABC subunit B [Lactococcus lactis subsp. lactis KF147]
MAIERITDNKFELVSKYEPAGDQGEAIAELVDNIENGEKAQILRGATGTGKTYTMSQVIARTGKPTLVMAHNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSS
>gi|125623401|ref|YP_001031884.1| excinuclease ABC subunit B [Lactococcus lactis subsp. cremoris MG1363]
MAIERITDNKFELVSKYDPAGDQGQAISELVENIENGEKAQILRGATGTGKTYTMSQVIAQTGKPTLVMAHNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSS
>gi|116511361|ref|YP_808577.1| excinuclease ABC subunit B [Lactococcus lactis subsp. cremoris SK11]
MAIERITDNKFELVSKYDPAGDQGQAISELVENIENGEKAQILRGATGTGKTYTMSQVIAQTGKPTLVMAHNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSS
>gi|256959893|ref|ZP_05564064.1| excinuclease ABC [Enterococcus faecalis Merz96]
MIERETSNTFHLASKYEPAGDQPAAIAELVDGVKGGEKAQILLGATGTGKTFTISNVIQEVNKPTLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSI
>gi|300862294|ref|ZP_07108374.1| excinuclease ABC, B subunit [Enterococcus faecalis TUSoD Ef11]
MIERETSNTFHLASKYEPAGDQPAAIAELVDGVKGGEKAQILLGATGTGKTFTISNVIQEVNKPTLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSI
>gi|227517725|ref|ZP_03947774.1| excinuclease ABC subunit B [Enterococcus faecalis TX0104]
MIERETSNTFHLASKYEPAGDQPAAIAELVDGVKGGEKAQILLGATGTGKTFTISNVIQEVNKPTLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSI
>gi|29375355|ref|NP_814509.1| excinuclease ABC subunit B [Enterococcus faecalis V583]
MIERETSNTFHLASKYEPAGDQPAAIAELVDGVKGGEKAQILLGATGTGKTFTISNVIQEVNKPTLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSI
>gi|229548705|ref|ZP_04437430.1| excinuclease ABC subunit B [Enterococcus faecalis ATCC 29200]
MIERETSNTFHLASKYEPAGDQPAAIAELVDGVKGGEKAQILLGATGTGKTFTISNVIQEVNKPTLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSI
>gi|307269815|ref|ZP_07551145.1| excinuclease ABC subunit B [Enterococcus faecalis TX4248]
MIERETSNTFHLASKYEPAGDQPAAIAELVDGVKGGEKAQILLGATGTGKTFTISNVIQEVNKPTLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSI
>gi|257875563|ref|ZP_05655216.1| excinuclease ABC [Enterococcus casseliflavus EC20]
MKMIERTTSHEFDLVSKYQPAGDQPEAIHQLVDGVVGGKKAQILLGATGTGKTYTISNLIKEVNKPTLIIAHNKTLAGQLYGEFKDFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDS
>gi|227551701|ref|ZP_03981750.1| excision endonuclease subunit UvrB [Enterococcus faecium TX1330]
MIERDTSRRFELVSKYQPAGDQPEAINQLVDGVVGGKKAQILLGATGTGKTYTISNLIEKVNKPTLIIAHNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|257869223|ref|ZP_05648876.1| excinuclease ABC [Enterococcus gallinarum EG2]
MKMIERTTSHEFELLSKYQPAGDQPEAIHQLVDGVVGGKKAQILLGATGTGKTYTVSNLIKEVNKPTLIIAHNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDS
>gi|257882916|ref|ZP_05662569.1| excinuclease ABC [Enterococcus faecium 1,231,502]
MIERDTSRHFELVSKYQPAGDQPEAINQLVDGVVGGKKAQILLGATGTGKTYTISNLIEKVNKPTLIIAHNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|69248957|ref|ZP_00604830.1| Excinuclease ABC, B subunit [Enterococcus faecium DO]
MIERDTSRHFELVSKYQPAGDQPEAINQLVDGVVGGKKAQILLGATGTGKTYTISNLIEKVNKPTLIIAHNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|257865936|ref|ZP_05645589.1| excinuclease ABC [Enterococcus casseliflavus EC30]
MKMIERTTSHEFDLVSKYQPAGDQPEAIHQLVDGVVGGKKAQILLGATGTGKTYTISNLIKEVNKPTLIIAHNKTLAGQLYGEFKDFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDS
>gi|294617428|ref|ZP_06697062.1| excinuclease ABC, B subunit [Enterococcus faecium E1679]
MIERDTSRHFELVSKYQPAGDQPEAINQLVDGVVGGKKAQILLGATGTGKTYTISNLIEKVNKPTLIIAHNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|304386222|ref|ZP_07368555.1| excision endonuclease subunit UvrB [Pediococcus acidilactici DSM 20284]
MNGGKIMIEREENRQFELVSKYQPTGDQPTAIKQLVDGIQKGEKEQILLGATGTGKTFTISNVIQQVNKPTLILSHNKTLAGQLYGEFKQFFPNNAVEYFVSYYDYYQPEAYVPSSDTYI
>gi|116333297|ref|YP_794824.1| excinuclease ABC subunit B [Lactobacillus brevis ATCC 367]
MIDRQTDRAFDLVSKYQPTGDQPEAINQLTHGIEAGEKAQILLGATGTGKTFTISNVIKNVNKPTLVLSHNKTLAGQLYGEFKQFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSI
>gi|270290697|ref|ZP_06196921.1| excinuclease ABC, B subunit [Pediococcus acidilactici 7_4]
MIEREENRQFELVSKYQPTGDQPTAIKQLVDGIQKGEKEQILLGATGTGKTFTISNVIQQVNKPTLILSHNKTLAGQLYGEFKQFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSI
>gi|227510643|ref|ZP_03940692.1| excision endonuclease subunit UvrB [Lactobacillus brevis subsp. gravesensis ATCC 27305]
MIERENNHKFDLVSSYQPTGDQPQAIKKLVNGVDDGKKAQILLGATGTGKTFTISNVIAQVNKPTLVLSHNKTLAGQLYGEFKEFFPHNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSI
>gi|227513658|ref|ZP_03943707.1| excision endonuclease subunit UvrB [Lactobacillus buchneri ATCC 11577]
MIERENNHKFDLVSSYQPTGDQPQAIKKLVNGVDDGKKAQILLGATGTGKTFTISNVIAQVNKPTLVLSHNKTLAGQLYGEFKEFFPHNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSI
>gi|300214835|gb|ADJ79251.1| UvrABC system protein B [Lactobacillus salivarius CECT 5713]
MIERQADRNFELVSKYSPTGDQPEAIQELTEGIKKGEKAQILMGATGTGKTFTISNVIKNVNKPTLVLAHNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSI
>gi|268319816|ref|YP_003293472.1| excinuclease ABC, B subunit , UvrABC system [Lactobacillus johnsonii FI9785]
MIRRQKNKKFELVSKFQPAGDQEQAIKKLTDGFEQGEKAQILEGATGTGKTFTMANVIAKLNKPTLVISHNKTLVGQLYGEFKEFFPKNAVDYFVSYYDYYQPEAYVPQSDTYIEKDSSI
>gi|90962150|ref|YP_536066.1| excinuclease ABC subunit B [Lactobacillus salivarius UCC118]
MIERQADRNFELVSKYSPTGDQPEAIQELTEGIKKGEKAQILMGATGTGKTFTISNVIKNVNKPTLVLAHNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSI
>gi|300361294|ref|ZP_07057471.1| excision endonuclease subunit UvrB [Lactobacillus gasseri JV-V03]
MIRRQKNKKFELVSKFQPAGDQEQAIKKLTDGFENGEKAQILEGATGTGKTFTMANVIAKLNKPTLVISHNKTLVGQLYGEFKEFFPKNAVDYFVSYYDYYQPEAYVPQSDTYIEKDSSI
>gi|184153027|ref|YP_001841368.1| excinuclease ABC subunit B [Lactobacillus reuteri JCM 1112]
MIYRQPDKKFELVSEYKPTGDQPQAINQLTKGIEDGEKAQILLGATGTGKTFTISNVIANVNKPTLILSHNKTLAGQLYGEMKKFFPHNAVEYFVSYYDYYQPEAYVPSSDTYIEKDASI
>gi|42518788|ref|NP_964718.1| excinuclease ABC subunit B [Lactobacillus johnsonii NCC 533]
MIRRQKNKKFELVSKFQPAGDQEQAIKKLTDGFEQGEKAQILEGATGTGKTFTMANVIAKLNKPTLVISHNKTLVGQLYGEFKEFFPKNAVDYFVSYYDYYQPEAYVPQSDTYIEKDSSI
>gi|227889627|ref|ZP_04007432.1| excision endonuclease subunit UvrB [Lactobacillus johnsonii ATCC 33200]
MIRRQKNKKFELVSKFQPAGDQEQAIKKLTDGFEQGEKAQILEGATGTGKTFTMANVIAKLNKPTLVISHNKTLVGQLYGEFKEFFPKNAVDYFVSYYDYYQPEAYVPQSDTYIEKDSSI
>gi|238853234|ref|ZP_04643619.1| excinuclease ABC subunit B [Lactobacillus gasseri 202-4]
MIRRQKNKKFELVSKFQPAGDQEQAIKKLTDGFEQGEKAQILEGATGTGKTFTMANVIAKLNKPTLVISHNKTLVGQLYGEFKEFFPKNAVDYFVSYYDYYQPEAYVPQSDTYIEKDSSI
>gi|301301267|ref|ZP_07207422.1| excinuclease ABC, B subunit [Lactobacillus salivarius ACS-116-V-Col5a]
MIERQADRNFELVSKYSPTGDQPEAIQELTEGIKKGEKAQILMGATGTGKTFTISNVIKNVNKPTLVLAHNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSI
>gi|227891173|ref|ZP_04008978.1| excinuclease ABC subunit B [Lactobacillus salivarius ATCC 11741]
MGGFDVIERQADRNFELVSKYSPTGDQPEAIQELTEGIKKGEKAQILMGATGTGKTFTISNVIKNVNKPTLVLAHNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIE
>gi|226820640|ref|ZP_03809759.1| excinuclease ABC subunit B [Lactobacillus gasseri MV-22]
MIRRQKNKKFELVSKFQPAGDQEQAIKKLTDGFEQGEKAQILEGATGTGKTFTMANVIAKLNKPTLVISHNKTLVGQLYGEFKEFFPKNAVDYFVSYYDYYQPEAYVPQSDTYIEKDSSI
>gi|194468167|ref|ZP_03074153.1| excinuclease ABC, B subunit [Lactobacillus reuteri 100-23]
MIYRQPDKKFELVSEYKPTGDQPQAINQLTKGIEDGEKAQILLGATGTGKTFTISNVIANVNKPTLILSHNKTLAGQLYGEMKKFFPHNAVEYFVSYYDYYQPEAYVPSSDTYIEKDASI
>gi|81428136|ref|YP_395135.1| excinuclease ABC subunit B [Lactobacillus sakei subsp. sakei 23K]
MIDRQNDNLFDLVAPYEPAGDQPAAIETLTKNFEAGAKAQVLMGATGTGKTFTMSNVIKNLNKPTLIISHNKTLAGQLYAEFKQFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSI
>gi|28377628|ref|NP_784520.1| excinuclease ABC subunit B [Lactobacillus plantarum WCFS1]
MIDRVDNNHFDLVSDYQPTGDQPQAIQQLTAGIESGEKEQILLGATGTGKTFTISNVIAKVNKPTLILSHNKTLAGQLYGEFKKFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSAI
>gi|148543619|ref|YP_001270989.1| excinuclease ABC subunit B [Lactobacillus reuteri DSM 20016]
MKLRFHFILFNCDVREEILLIYRQPDKKFELVSEYKPTGDQPQAINQLTKGIEDGEKAQILLGATGTGKTFTISNVIANVNKPTLILSHNKTLAGQLYGEMKKFFPHNAVEYFVSYYDYY
>gi|116629946|ref|YP_815118.1| excinuclease ABC subunit B [Lactobacillus gasseri ATCC 33323]
MIRRQKNKKFELVSKFQPAGDQEQAIKKLTDGFEQGEKAQILEGATGTGKTFTMANVIAKLNKPTLVISHNKTLVGQLYGEFKEFFPKNAVDYFVSYYDYYQPEAYVPQSDTYIEKDSSI
>gi|227545102|ref|ZP_03975151.1| excision endonuclease subunit UvrB [Lactobacillus reuteri CF48-3A]
MKLRFHFILFNCDVREEFLLIYRQPDKKFELVSEYKPTGDQPQAINQLTKGIEDGEKAQILLGATGTGKTFTISNVIANVNKPTLILSHNKTLAGQLYGEMKKFFPHNAVEYFVSYYDYY
>gi|133930529|gb|ABO43835.1| excinuclease ABC, B subunit [Lactobacillus reuteri]
MIYRQPDKKFELVSEYKPTGDQPQAINQLTKGIEDGEKAQILLGATGTGKTFTISNVIANVNKPTWILSHNKTLAGQLYGEMKKFFPHNAVEYFVSYYDYYQPEAYVPSSDTYIEKDASI
>gi|116492251|ref|YP_803986.1| excinuclease ABC subunit B [Pediococcus pentosaceus ATCC 25745]
MIKRENDREFELVSKYQPTGDQPTAINELVDGIKSGEKEQILLGATGTGKTFTISNVIQKVNKPTLILSHNKTLAGQLYGEFKQFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSI
>gi|227535570|ref|ZP_03965619.1| excision endonuclease subunit UvrB [Lactobacillus paracasei subsp. paracasei ATCC 25302
MSMIERIADRKFDLVSPYQPAGDQPQAIAKLTKGFEEGKKEQILLGATGTGKTFTMSNIIANLNKPTLILSHNKTLAGQLYGEFKEFFPHNAVEYFVSYYDYYQPEAYVPSTDTYIEKDS
>gi|116494463|ref|YP_806197.1| excinuclease ABC subunit B [Lactobacillus casei ATCC 334]
MIERIADRKFDLVSPYQPAGDQPQAIAKLTKGFEEGKKEQILLGATGTGKTFTMSNIIANLNKPTLILSHNKTLAGQLYGEFKEFFPHNAVEYFVSYYDYYQPEAYVPSTDTYIEKDSAI
>gi|229551769|ref|ZP_04440494.1| excision endonuclease subunit UvrB [Lactobacillus rhamnosus LMS2-1]
MIERIADRKFDLVSPYKPAGDQPQAIAKLTKGFEEGKKAQILLGATGTGKTFTMSNIIANLNKPTLILSHNKTLAGQLYGEFKEFFPHNAVEYFVSYYDYYQPEAYVPSTDTYIEKDSAI
>gi|116617516|ref|YP_817887.1| excinuclease ABC subunit B [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293]
MIERQIEHEFEIKSKYEPTGDQPKAIEKLVGGINNHVKEQILLGATGTGKTFTISNVIKEVKKPTLVLSHNKTLAGQLYGELKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSAV
>gi|199597263|ref|ZP_03210694.1| excinuclease ABC subunit B [Lactobacillus rhamnosus HN001]
MIERIADRKFDLVSPYKPAGDQPQAIAKLTKGFEEGKKAQILLGATGTGKTFTMSNIIANLNKPTLILSHNKTLAGQLYGEFKEFFPHNAVEYFVSYYDYYQPEAYVPSTDTYIEKDSAI
>gi|227529561|ref|ZP_03959610.1| excision endonuclease subunit UvrB [Lactobacillus vaginalis ATCC 49540]
MIYRQPHKNFELVSDYKPTGDQPEAIKELTTGIEKGEKAQILLGATGTGKTFTISNVIAKVNKPTLILSHNKTLAGQLYSEMKKFFPHNAVEYFVSYYDYYQPEAYVPSSDTYIEKDASI
>gi|227432640|ref|ZP_03914616.1| excision endonuclease subunit UvrB [Leuconostoc mesenteroides subsp. cremoris ATCC 1925
MIERQIEHEFEIKSKYEPTGDQPQAIEKLVGGINNHVKEQILLGATGTGKTFTISNVIKEVKKPTLVLSHNKTLAGQLYGELKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSAV
[/b]
I would like to remove all but the accession #(ie:NP_721220.1), species (ie:[Strept mut]), and the sequence of course.
starting with this
>gi|24379265|ref|NP_721220.1| excinuclease ABC subunit B [Strept mut]
MIDRKDNNQFHLVSKYEPSGDQPEAIEALVDNIEGGEKAQILKGATGTGKTYTMSQVIQKVNKPTLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
ending up with this
>NP_721220.1 [Strept mut]
MIDRKDNNQFHLVSKYEPSGDQPEAIEALVDNIEGGEKAQILKGATGTGKTYTMSQVIQKVNKPTLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
Ideally I would like to keep the accession # and replace .1 [Genus species] with the 1st letter of the genus and the first three of the species.
Like this:
ending up with this
>NP_721220.Smu
MIDRKDNNQFHLVSKYEPSGDQPEAIEALVDNIEGGEKAQILKGATGTGKTYTMSQVIQKVNKPTLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
Is this possible to do in one step of replacing?
Thank you so much,
Joseph Boggs
example data below
>gi|24379265|ref|NP_721220.1| excinuclease ABC subunit B [Streptococcus mutans UA159]
MIDRKDNNQFHLVSKYEPSGDQPEAIEALVDNIEGGEKAQILKGATGTGKTYTMSQVIQKVNKPTLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|290580728|ref|YP_003485120.1| excinuclease ABC subunit B [Streptococcus mutans NN2025]
MIDRKDNNQFHLVSKYEPSGDQPEAIEALVDNIEGGEKAQILKGATGTGKTYTMSQVIQKVNKPTLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|306831686|ref|ZP_07464843.1| excision endonuclease subunit UvrB [Streptococcus gallolyticus subsp. gallolyticus TX20
MIDRVENNQFKLVSKYQPSGDQPEAIEALVDNIEGGEKAQILLGATGTGKTYTMSQVIAKVNKPTLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|288905600|ref|YP_003430822.1| excinuclease ABC (subunit B) [Streptococcus gallolyticus UCN34]
MIDRIENNQFKLVSKYQPSGDQPEAIEALVDNIEGGEKAQILLGATGTGKTYTMSQVIAKVNKPTLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|306833826|ref|ZP_07466951.1| excision endonuclease subunit UvrB [Streptococcus bovis ATCC 700338]
MIDRVENNQFKLVSKYQPSGDQPEAIEALVDNIEGGEKAQILLGATGTGKTYTMSQVIAKVNKPTLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|228477022|ref|ZP_04061660.1| excinuclease ABC subunit B [Streptococcus salivarius SK126]
MIDRKEDNQFHLVSKYEPSGDQPQAIEALVDNIEGGEKAQILKGATGTGKTYTMSQVIQRVNKPTLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDFYQPEAYVPSSDTYIEKDSSV
>gi|22537607|ref|NP_688458.1| excinuclease ABC subunit B [Streptococcus agalactiae 2603V/R]
MIDRKDTNRFKLVSKYSPSGDQPQAIETLVDNIEGGEKAQILKGATGTGKTYTMSQVIAQVNKPTLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|77409684|ref|ZP_00786351.1| excinuclease ABC, B subunit [Streptococcus agalactiae COH1]
MIDRKDTNRFKLVSKYSPSGDQPQAIETLVDNIEGGEKAQILKGATGTGKTYTMSQVIAQVNKPTLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|76787746|ref|YP_330102.1| excinuclease ABC subunit B [Streptococcus agalactiae A909]
MIDRKDTNRFKLVSKYSPSGDQPQAIETLVDNIEGGEKAQILKGATGTGKTYTMSQVIAQVNKPTLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|171779931|ref|ZP_02920835.1| hypothetical protein STRINF_01718 [Streptococcus infantarius subsp. infantarius ATCC BA
MIDRIENNHFKLVSKYEPSGDQPQAIETLVNNIEGGEKAQILLGATGTGKTYTMSQVIAKVNKPTLVIAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|116628195|ref|YP_820814.1| excinuclease ABC subunit B [Streptococcus thermophilus LMD-9]
MKGKTMIDRKEDNQFHLVSKYEPSGDQPQAIETLVDNIKGGEKAQILKGATGTGKTYTMSQVIQRVNKPTLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIE
>gi|251782717|ref|YP_002997020.1| excinuclease ABC subunit B [Streptococcus dysgalactiae subsp. equisimilis GGS_124]
MIDKRDDKPFHLVSKYEPSGDQPQAIETLVDNIEGGEKAQILLGATGTGKTYTMSQVINKVNKPTLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|55821473|ref|YP_139915.1| excinuclease ABC subunit B [Streptococcus thermophilus LMG 18311]
MKGKTMIDRKEDNQFHLVSKYEPSGDQPQAIETLVDNIKGGEKAQILKGATGTGKTYTMSQVIQRVNKPTLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIE
>gi|222153289|ref|YP_002562466.1| excinuclease ABC subunit B [Streptococcus uberis 0140J]
MIDRRDENTFKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILLGATGTGKTYTMSQVISKVNKPTLVIAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|223932268|ref|ZP_03624271.1| excinuclease ABC, B subunit [Streptococcus suis 89/1591]
MINRNTENQFKLVSKYSPSGDQPQAIETLVDNIEGGEKAQILMGATGTGKTYTMSQVIARVNKPTLVIAHNKTLAGQLYSEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|146320885|ref|YP_001200596.1| excinuclease ABC subunit B [Streptococcus suis 98HAH33]
MINRNTENQFKLVSKYAPSGDQPQAIETLVDNIEGGEKAQILMGATGTGKTYTMSQVIARVNKPTLVIAHNKTLAGQLYSEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|289168043|ref|YP_003446312.1| excinuclease ABC-subunit B [Streptococcus mitis B6]
MINRITDNQFKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|225860928|ref|YP_002742437.1| excinuclease ABC subunit B [Streptococcus pneumoniae Taiwan19F-14]
MINRITDNKFKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|225868289|ref|YP_002744237.1| UvrABC system protein B (UvrB protein) [Streptococcus equi subsp. zooepidemicus]
MIDKRDFKAFKLVSKYDPSGDQPQAIEALVDNIEGGEKAQILLGATGTGKTYTMSQVISKVNKPTLVIAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|15903161|ref|NP_358711.1| excinuclease ABC subunit B [Streptococcus pneumoniae R6]
MINHITDNQFKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|307704944|ref|ZP_07641835.1| excinuclease ABC, B subunit [Streptococcus mitis SK597]
MINRITDNQFKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|149012289|ref|ZP_01833358.1| excinuclease ABC, B subunit [Streptococcus pneumoniae SP19-BS75]
MINHITDNQFKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|307708786|ref|ZP_07645248.1| excinuclease ABC, B subunit [Streptococcus mitis NCTC 12261]
MITRITDNQFKLVSKYEPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|270292807|ref|ZP_06199018.1| excinuclease ABC, B subunit [Streptococcus sp. M143]
MINRITDNQFKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|15901100|ref|NP_345704.1| excinuclease ABC subunit B [Streptococcus pneumoniae TIGR4]
MINHITDNQFKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|307709471|ref|ZP_07645928.1| excinuclease ABC, B subunit [Streptococcus mitis SK564]
MINRITDNQFKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|306829598|ref|ZP_07462788.1| excision endonuclease subunit UvrB [Streptococcus mitis ATCC 6249]
MINRITDNKFKLVSKYEPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|225856905|ref|YP_002738416.1| excinuclease ABC subunit B [Streptococcus pneumoniae P1031]
MINHITDNQFKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|195978380|ref|YP_002123624.1| excinuclease ABC subunit B [Streptococcus equi subsp. zooepidemicus MGCS10565]
MIDKRDFKAFKLVSKYAPSGDQPQAIEALVDNIESGEKAQILLGATGTGKTYTMSQVISKVNKPTLVIAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|153854|gb|AAA27020.1| uvs402 protein [Streptococcus pneumoniae]
MERGILMINHITDNQFKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYI
>gi|293365540|ref|ZP_06612249.1| excision endonuclease subunit UvrB [Streptococcus oralis ATCC 35037]
MINRITDNKFKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|306825137|ref|ZP_07458479.1| excision endonuclease subunit UvrB [Streptococcus sp. oral taxon 071 str. 73H25AP]
MINRITDNKFKLVSKYEPSGDQPQAIERLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|225870778|ref|YP_002746725.1| UvrABC system protein B (UvrB protein) [Streptococcus equi subsp. equi 4047]
MIDKRDFKAFKLVSKYAPSGDQPQAIETLVDNIEGGEKAQILLGATGTGKTYTMSQVISKVNKPTLVVAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|302023818|ref|ZP_07249029.1| excinuclease ABC subunit B [Streptococcus suis 05HAS68]
MINRNTENQFKLVSKYSPSGDQPQAIETLVDNIEGGEKAQILMGATGTGKTYTMSQVIARVNKPTLVIAHNKTLAGQLYSEFNALFPQNAVEYFVSYSDYYQPEAYVPSSDTYIEKDSSS
>gi|169833714|ref|YP_001694670.1| excinuclease ABC subunit B [Streptococcus pneumoniae Hungary19A-6]
MINHITDNQFKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|149019230|ref|ZP_01834592.1| excinuclease ABC subunit B [Streptococcus pneumoniae SP23-BS72]
MINHITDNQFKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|296876387|ref|ZP_06900439.1| excision endonuclease subunit UvrB [Streptococcus parasanguinis ATCC 15912]
MINRVTDNKFKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVIAQVNKPTLVIAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|148993848|ref|ZP_01823250.1| excinuclease ABC, B subunit [Streptococcus pneumoniae SP9-BS68]
MINHITDNQFKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|307706695|ref|ZP_07643501.1| excinuclease ABC, B subunit [Streptococcus mitis SK321]
MINRITDNQFKLVSKYQPSGDQPQAIKQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|301794321|emb|CBW36746.1| UvrABC system protein B (UvrB protein) [Streptococcus pneumoniae INV104]
MINHITDNQFKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|303254266|ref|ZP_07340375.1| excinuclease ABC subunit B [Streptococcus pneumoniae BS455]
MINHITDNQFKLVSKYQPSGDQLQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|262282394|ref|ZP_06060162.1| excinuclease ABC subunit B [Streptococcus sp. 2_1_36FAA]
MINRITDNKFELISKYEPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVIAQVNKPTLVIAHNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|125718171|ref|YP_001035304.1| excinuclease ABC subunit B [Streptococcus sanguinis SK36]
MINRITDNKFELVSKYKPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVIAQVNKPTLVIAHNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|157149718|ref|YP_001450327.1| excinuclease ABC subunit B [Streptococcus gordonii str. Challis substr. CH1]
MINRITDNKFELISKYEPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVIAQVNKPTLVIAHNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|21910532|ref|NP_664800.1| excinuclease ABC subunit B [Streptococcus pyogenes MGAS315]
MIDKRDDKPFKLKSKYKPSGDQPQAIESLVDNIEGGEKAQILLGATGTGKTYTMSQVISKVNKPTLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|71903721|ref|YP_280524.1| excinuclease ABC subunit B [Streptococcus pyogenes MGAS6180]
MIDKRDDKPFKLKSKYKPSGDQPQAIESLVDNIEGGEKAQILLGATGTGKTYTMSQVISKVNKPTLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|94990640|ref|YP_598740.1| excinuclease ABC subunit B [Streptococcus pyogenes MGAS10270]
MIDKRDDKPFKLKSKYKPSGDQPQAIESLVDNIEGGEKAQILLGATGTGKTYTMSQVISKVNKPTLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|139473634|ref|YP_001128350.1| excinuclease ABC subunit B [Streptococcus pyogenes str. Manfredo]
MIDKRDDKPFKLKSKYKPSGDQPQAIESLVDNIEGGEKAQILLGATGTGKTYTMSQVISKVNKPTLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|50914390|ref|YP_060362.1| excinuclease ABC subunit B [Streptococcus pyogenes MGAS10394]
MIDKRDDKPFKLKSKYKPSGDQPQAIESLVDNIEGGEKAQILLGATGTGKTYTMSQVISKVNKPTLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|19746295|ref|NP_607431.1| excinuclease ABC subunit B [Streptococcus pyogenes MGAS8232]
MIDKRDDKPFKLKSKYKPSGDQPQAIESLVDNIEGGEKAQILLGATGTGKTYTMSQVISKVNKPTLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|15675262|ref|NP_269436.1| excinuclease ABC subunit B [Streptococcus pyogenes M1 GAS]
MIDKRDDKPFKLKSKYKPSGDQPQAIESLVDNIEGGEKAQILLGATGTGKTYTMSQVISKVNKPTLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|94994564|ref|YP_602662.1| excinuclease ABC subunit B [Streptococcus pyogenes MGAS10750]
MIDKRDDKPFKLKSKYKPSGDQPQAIESLVDNIEGGEKAQILLGATGTGKTYTMSQVISKVNKPTLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|15672544|ref|NP_266718.1| excinuclease ABC subunit B [Lactococcus lactis subsp. lactis Il1403]
MAIERITDNKFELVSKYEPAGDQGEAIAELVDNIENGEKAQILRGATGTGKTYTMSQVIARTGKPTLVMAHNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSS
>gi|281491028|ref|YP_003353008.1| excinuclease ABC subunit B [Lactococcus lactis subsp. lactis KF147]
MAIERITDNKFELVSKYEPAGDQGEAIAELVDNIENGEKAQILRGATGTGKTYTMSQVIARTGKPTLVMAHNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSS
>gi|125623401|ref|YP_001031884.1| excinuclease ABC subunit B [Lactococcus lactis subsp. cremoris MG1363]
MAIERITDNKFELVSKYDPAGDQGQAISELVENIENGEKAQILRGATGTGKTYTMSQVIAQTGKPTLVMAHNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSS
>gi|116511361|ref|YP_808577.1| excinuclease ABC subunit B [Lactococcus lactis subsp. cremoris SK11]
MAIERITDNKFELVSKYDPAGDQGQAISELVENIENGEKAQILRGATGTGKTYTMSQVIAQTGKPTLVMAHNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSS
>gi|256959893|ref|ZP_05564064.1| excinuclease ABC [Enterococcus faecalis Merz96]
MIERETSNTFHLASKYEPAGDQPAAIAELVDGVKGGEKAQILLGATGTGKTFTISNVIQEVNKPTLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSI
>gi|300862294|ref|ZP_07108374.1| excinuclease ABC, B subunit [Enterococcus faecalis TUSoD Ef11]
MIERETSNTFHLASKYEPAGDQPAAIAELVDGVKGGEKAQILLGATGTGKTFTISNVIQEVNKPTLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSI
>gi|227517725|ref|ZP_03947774.1| excinuclease ABC subunit B [Enterococcus faecalis TX0104]
MIERETSNTFHLASKYEPAGDQPAAIAELVDGVKGGEKAQILLGATGTGKTFTISNVIQEVNKPTLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSI
>gi|29375355|ref|NP_814509.1| excinuclease ABC subunit B [Enterococcus faecalis V583]
MIERETSNTFHLASKYEPAGDQPAAIAELVDGVKGGEKAQILLGATGTGKTFTISNVIQEVNKPTLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSI
>gi|229548705|ref|ZP_04437430.1| excinuclease ABC subunit B [Enterococcus faecalis ATCC 29200]
MIERETSNTFHLASKYEPAGDQPAAIAELVDGVKGGEKAQILLGATGTGKTFTISNVIQEVNKPTLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSI
>gi|307269815|ref|ZP_07551145.1| excinuclease ABC subunit B [Enterococcus faecalis TX4248]
MIERETSNTFHLASKYEPAGDQPAAIAELVDGVKGGEKAQILLGATGTGKTFTISNVIQEVNKPTLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSI
>gi|257875563|ref|ZP_05655216.1| excinuclease ABC [Enterococcus casseliflavus EC20]
MKMIERTTSHEFDLVSKYQPAGDQPEAIHQLVDGVVGGKKAQILLGATGTGKTYTISNLIKEVNKPTLIIAHNKTLAGQLYGEFKDFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDS
>gi|227551701|ref|ZP_03981750.1| excision endonuclease subunit UvrB [Enterococcus faecium TX1330]
MIERDTSRRFELVSKYQPAGDQPEAINQLVDGVVGGKKAQILLGATGTGKTYTISNLIEKVNKPTLIIAHNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|257869223|ref|ZP_05648876.1| excinuclease ABC [Enterococcus gallinarum EG2]
MKMIERTTSHEFELLSKYQPAGDQPEAIHQLVDGVVGGKKAQILLGATGTGKTYTVSNLIKEVNKPTLIIAHNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDS
>gi|257882916|ref|ZP_05662569.1| excinuclease ABC [Enterococcus faecium 1,231,502]
MIERDTSRHFELVSKYQPAGDQPEAINQLVDGVVGGKKAQILLGATGTGKTYTISNLIEKVNKPTLIIAHNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|69248957|ref|ZP_00604830.1| Excinuclease ABC, B subunit [Enterococcus faecium DO]
MIERDTSRHFELVSKYQPAGDQPEAINQLVDGVVGGKKAQILLGATGTGKTYTISNLIEKVNKPTLIIAHNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|257865936|ref|ZP_05645589.1| excinuclease ABC [Enterococcus casseliflavus EC30]
MKMIERTTSHEFDLVSKYQPAGDQPEAIHQLVDGVVGGKKAQILLGATGTGKTYTISNLIKEVNKPTLIIAHNKTLAGQLYGEFKDFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDS
>gi|294617428|ref|ZP_06697062.1| excinuclease ABC, B subunit [Enterococcus faecium E1679]
MIERDTSRHFELVSKYQPAGDQPEAINQLVDGVVGGKKAQILLGATGTGKTYTISNLIEKVNKPTLIIAHNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
>gi|304386222|ref|ZP_07368555.1| excision endonuclease subunit UvrB [Pediococcus acidilactici DSM 20284]
MNGGKIMIEREENRQFELVSKYQPTGDQPTAIKQLVDGIQKGEKEQILLGATGTGKTFTISNVIQQVNKPTLILSHNKTLAGQLYGEFKQFFPNNAVEYFVSYYDYYQPEAYVPSSDTYI
>gi|116333297|ref|YP_794824.1| excinuclease ABC subunit B [Lactobacillus brevis ATCC 367]
MIDRQTDRAFDLVSKYQPTGDQPEAINQLTHGIEAGEKAQILLGATGTGKTFTISNVIKNVNKPTLVLSHNKTLAGQLYGEFKQFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSI
>gi|270290697|ref|ZP_06196921.1| excinuclease ABC, B subunit [Pediococcus acidilactici 7_4]
MIEREENRQFELVSKYQPTGDQPTAIKQLVDGIQKGEKEQILLGATGTGKTFTISNVIQQVNKPTLILSHNKTLAGQLYGEFKQFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSI
>gi|227510643|ref|ZP_03940692.1| excision endonuclease subunit UvrB [Lactobacillus brevis subsp. gravesensis ATCC 27305]
MIERENNHKFDLVSSYQPTGDQPQAIKKLVNGVDDGKKAQILLGATGTGKTFTISNVIAQVNKPTLVLSHNKTLAGQLYGEFKEFFPHNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSI
>gi|227513658|ref|ZP_03943707.1| excision endonuclease subunit UvrB [Lactobacillus buchneri ATCC 11577]
MIERENNHKFDLVSSYQPTGDQPQAIKKLVNGVDDGKKAQILLGATGTGKTFTISNVIAQVNKPTLVLSHNKTLAGQLYGEFKEFFPHNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSI
>gi|300214835|gb|ADJ79251.1| UvrABC system protein B [Lactobacillus salivarius CECT 5713]
MIERQADRNFELVSKYSPTGDQPEAIQELTEGIKKGEKAQILMGATGTGKTFTISNVIKNVNKPTLVLAHNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSI
>gi|268319816|ref|YP_003293472.1| excinuclease ABC, B subunit , UvrABC system [Lactobacillus johnsonii FI9785]
MIRRQKNKKFELVSKFQPAGDQEQAIKKLTDGFEQGEKAQILEGATGTGKTFTMANVIAKLNKPTLVISHNKTLVGQLYGEFKEFFPKNAVDYFVSYYDYYQPEAYVPQSDTYIEKDSSI
>gi|90962150|ref|YP_536066.1| excinuclease ABC subunit B [Lactobacillus salivarius UCC118]
MIERQADRNFELVSKYSPTGDQPEAIQELTEGIKKGEKAQILMGATGTGKTFTISNVIKNVNKPTLVLAHNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSI
>gi|300361294|ref|ZP_07057471.1| excision endonuclease subunit UvrB [Lactobacillus gasseri JV-V03]
MIRRQKNKKFELVSKFQPAGDQEQAIKKLTDGFENGEKAQILEGATGTGKTFTMANVIAKLNKPTLVISHNKTLVGQLYGEFKEFFPKNAVDYFVSYYDYYQPEAYVPQSDTYIEKDSSI
>gi|184153027|ref|YP_001841368.1| excinuclease ABC subunit B [Lactobacillus reuteri JCM 1112]
MIYRQPDKKFELVSEYKPTGDQPQAINQLTKGIEDGEKAQILLGATGTGKTFTISNVIANVNKPTLILSHNKTLAGQLYGEMKKFFPHNAVEYFVSYYDYYQPEAYVPSSDTYIEKDASI
>gi|42518788|ref|NP_964718.1| excinuclease ABC subunit B [Lactobacillus johnsonii NCC 533]
MIRRQKNKKFELVSKFQPAGDQEQAIKKLTDGFEQGEKAQILEGATGTGKTFTMANVIAKLNKPTLVISHNKTLVGQLYGEFKEFFPKNAVDYFVSYYDYYQPEAYVPQSDTYIEKDSSI
>gi|227889627|ref|ZP_04007432.1| excision endonuclease subunit UvrB [Lactobacillus johnsonii ATCC 33200]
MIRRQKNKKFELVSKFQPAGDQEQAIKKLTDGFEQGEKAQILEGATGTGKTFTMANVIAKLNKPTLVISHNKTLVGQLYGEFKEFFPKNAVDYFVSYYDYYQPEAYVPQSDTYIEKDSSI
>gi|238853234|ref|ZP_04643619.1| excinuclease ABC subunit B [Lactobacillus gasseri 202-4]
MIRRQKNKKFELVSKFQPAGDQEQAIKKLTDGFEQGEKAQILEGATGTGKTFTMANVIAKLNKPTLVISHNKTLVGQLYGEFKEFFPKNAVDYFVSYYDYYQPEAYVPQSDTYIEKDSSI
>gi|301301267|ref|ZP_07207422.1| excinuclease ABC, B subunit [Lactobacillus salivarius ACS-116-V-Col5a]
MIERQADRNFELVSKYSPTGDQPEAIQELTEGIKKGEKAQILMGATGTGKTFTISNVIKNVNKPTLVLAHNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSI
>gi|227891173|ref|ZP_04008978.1| excinuclease ABC subunit B [Lactobacillus salivarius ATCC 11741]
MGGFDVIERQADRNFELVSKYSPTGDQPEAIQELTEGIKKGEKAQILMGATGTGKTFTISNVIKNVNKPTLVLAHNKTLAGQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIE
>gi|226820640|ref|ZP_03809759.1| excinuclease ABC subunit B [Lactobacillus gasseri MV-22]
MIRRQKNKKFELVSKFQPAGDQEQAIKKLTDGFEQGEKAQILEGATGTGKTFTMANVIAKLNKPTLVISHNKTLVGQLYGEFKEFFPKNAVDYFVSYYDYYQPEAYVPQSDTYIEKDSSI
>gi|194468167|ref|ZP_03074153.1| excinuclease ABC, B subunit [Lactobacillus reuteri 100-23]
MIYRQPDKKFELVSEYKPTGDQPQAINQLTKGIEDGEKAQILLGATGTGKTFTISNVIANVNKPTLILSHNKTLAGQLYGEMKKFFPHNAVEYFVSYYDYYQPEAYVPSSDTYIEKDASI
>gi|81428136|ref|YP_395135.1| excinuclease ABC subunit B [Lactobacillus sakei subsp. sakei 23K]
MIDRQNDNLFDLVAPYEPAGDQPAAIETLTKNFEAGAKAQVLMGATGTGKTFTMSNVIKNLNKPTLIISHNKTLAGQLYAEFKQFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSI
>gi|28377628|ref|NP_784520.1| excinuclease ABC subunit B [Lactobacillus plantarum WCFS1]
MIDRVDNNHFDLVSDYQPTGDQPQAIQQLTAGIESGEKEQILLGATGTGKTFTISNVIAKVNKPTLILSHNKTLAGQLYGEFKKFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSAI
>gi|148543619|ref|YP_001270989.1| excinuclease ABC subunit B [Lactobacillus reuteri DSM 20016]
MKLRFHFILFNCDVREEILLIYRQPDKKFELVSEYKPTGDQPQAINQLTKGIEDGEKAQILLGATGTGKTFTISNVIANVNKPTLILSHNKTLAGQLYGEMKKFFPHNAVEYFVSYYDYY
>gi|116629946|ref|YP_815118.1| excinuclease ABC subunit B [Lactobacillus gasseri ATCC 33323]
MIRRQKNKKFELVSKFQPAGDQEQAIKKLTDGFEQGEKAQILEGATGTGKTFTMANVIAKLNKPTLVISHNKTLVGQLYGEFKEFFPKNAVDYFVSYYDYYQPEAYVPQSDTYIEKDSSI
>gi|227545102|ref|ZP_03975151.1| excision endonuclease subunit UvrB [Lactobacillus reuteri CF48-3A]
MKLRFHFILFNCDVREEFLLIYRQPDKKFELVSEYKPTGDQPQAINQLTKGIEDGEKAQILLGATGTGKTFTISNVIANVNKPTLILSHNKTLAGQLYGEMKKFFPHNAVEYFVSYYDYY
>gi|133930529|gb|ABO43835.1| excinuclease ABC, B subunit [Lactobacillus reuteri]
MIYRQPDKKFELVSEYKPTGDQPQAINQLTKGIEDGEKAQILLGATGTGKTFTISNVIANVNKPTWILSHNKTLAGQLYGEMKKFFPHNAVEYFVSYYDYYQPEAYVPSSDTYIEKDASI
>gi|116492251|ref|YP_803986.1| excinuclease ABC subunit B [Pediococcus pentosaceus ATCC 25745]
MIKRENDREFELVSKYQPTGDQPTAINELVDGIKSGEKEQILLGATGTGKTFTISNVIQKVNKPTLILSHNKTLAGQLYGEFKQFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSI
>gi|227535570|ref|ZP_03965619.1| excision endonuclease subunit UvrB [Lactobacillus paracasei subsp. paracasei ATCC 25302
MSMIERIADRKFDLVSPYQPAGDQPQAIAKLTKGFEEGKKEQILLGATGTGKTFTMSNIIANLNKPTLILSHNKTLAGQLYGEFKEFFPHNAVEYFVSYYDYYQPEAYVPSTDTYIEKDS
>gi|116494463|ref|YP_806197.1| excinuclease ABC subunit B [Lactobacillus casei ATCC 334]
MIERIADRKFDLVSPYQPAGDQPQAIAKLTKGFEEGKKEQILLGATGTGKTFTMSNIIANLNKPTLILSHNKTLAGQLYGEFKEFFPHNAVEYFVSYYDYYQPEAYVPSTDTYIEKDSAI
>gi|229551769|ref|ZP_04440494.1| excision endonuclease subunit UvrB [Lactobacillus rhamnosus LMS2-1]
MIERIADRKFDLVSPYKPAGDQPQAIAKLTKGFEEGKKAQILLGATGTGKTFTMSNIIANLNKPTLILSHNKTLAGQLYGEFKEFFPHNAVEYFVSYYDYYQPEAYVPSTDTYIEKDSAI
>gi|116617516|ref|YP_817887.1| excinuclease ABC subunit B [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293]
MIERQIEHEFEIKSKYEPTGDQPKAIEKLVGGINNHVKEQILLGATGTGKTFTISNVIKEVKKPTLVLSHNKTLAGQLYGELKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSAV
>gi|199597263|ref|ZP_03210694.1| excinuclease ABC subunit B [Lactobacillus rhamnosus HN001]
MIERIADRKFDLVSPYKPAGDQPQAIAKLTKGFEEGKKAQILLGATGTGKTFTMSNIIANLNKPTLILSHNKTLAGQLYGEFKEFFPHNAVEYFVSYYDYYQPEAYVPSTDTYIEKDSAI
>gi|227529561|ref|ZP_03959610.1| excision endonuclease subunit UvrB [Lactobacillus vaginalis ATCC 49540]
MIYRQPHKNFELVSDYKPTGDQPEAIKELTTGIEKGEKAQILLGATGTGKTFTISNVIAKVNKPTLILSHNKTLAGQLYSEMKKFFPHNAVEYFVSYYDYYQPEAYVPSSDTYIEKDASI
>gi|227432640|ref|ZP_03914616.1| excision endonuclease subunit UvrB [Leuconostoc mesenteroides subsp. cremoris ATCC 1925
MIERQIEHEFEIKSKYEPTGDQPQAIEKLVGGINNHVKEQILLGATGTGKTFTISNVIKEVKKPTLVLSHNKTLAGQLYGELKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSAV
[/b]