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You can get near this by having multiple instances of TextPad open. Run each tool in a different instance.

displaying or excluding all lines that match a regexp/search string would be good. Then being able to refine the currently displayed selection of lines with additional searches.

If a tool uses any of the macros $File, $FileName, $UNIXFile or $DOSFile, the active document is saved prior to running the tool. It would be nice to have macros containing the same information but without the save action. Then I could, for example, create a tool to take a back-up of a document that ...